Authentication
Login, logout, and session management for Seqera CLI
18 docs tagged with "cli"
View all tagsAutomation
An introduction to automation with APIs and CLI tools in Seqera Platform
Co-Scientist in the Seqera CLI
AI-powered assistant for bioinformatics workflows and Seqera Platform
Command approval
Control which local commands require user approval in Co-Scientist
Commands
Seqerakit command options
Get started
AI-powered assistant for bioinformatics workflows and Seqera Platform
Installation
Install and configure the Seqera CLI
Installation
Seqerakit installation options
Language server
Use language-server code intelligence features in Co-Scientist
Modes
Work in build mode, plan mode, and goal mode in the Seqera CLI
Skills
Discover, create, and install skills in the Seqera CLI
Templates
Seqerakit YAML configuration file templates and instructions
Use cases
Learn how to use the Seqera CLI for bioinformatics workflows, pipeline development, and data management
Working with Claude Code
Install and maintain the Co-Scientist skill for Claude Code
Working with Codex
Install and maintain the Co-Scientist skill for Codex
Working with GitHub Copilot
Install and maintain the Co-Scientist skill for GitHub Copilot
Working with other coding agents
Install and maintain the Co-Scientist skill for other coding agents
YAML configuration
seqerakit YAML configuration file options