Highlights​

• Co-Scientist is now available for Enterprise deployments.
• Pipelines now support a GitHub App manifest flow for credential creation, with higher throughput than personal access tokens (PATs).
• Compute environments support descriptions and can be disabled, and Google Batch and Azure Batch have significant stability and scalability improvements.
• AWS, Azure, and GCP each gain deeper credential and identity management, including Workload Identity Federation (WIF) for Google Cloud Batch and Entra service principal support for Azure Batch.
• Nextflow data lineage is configurable and attached to pipeline runs and Data Explorer objects.
• Existing Studios can be edited, and new workspace settings for custom container registry controls and default collaboration modes provide top-down granular management.
• Datasets now support linked (URL-referenced) remotely-hosted data.
• Data Explorer adds IGV and Molstar 3D viewer for genomic and structural files, respectively.
• Audit logs have a new user interface with on-demand CSV export, configurable maximum records, and richer event context. The Admin panel exposes real-time usage metrics.

Feature updates and improvements​

Co-Scientist​

• Added support for Co-Scientist in Enterprise deployments.

Studios​

• Enabled Studios on all workspaces by default. See the Upgrade guide for more information.
• Added workspace setting for default Studios session collaboration.
• Added multi-stage builds and Wave v1.33.0 support for custom Studios containers.
• Added nameStrategy configuration option to Studios workspace settings.
• Added ability to edit the settings of stopped Studios.
• Container registry improvements, including:
  • Configurable container repository path for custom image builds.
  • Configurable container image naming strategy (default, tag prefix, image suffix, none).
• Added new environment variables. See Data features for the full descriptions and defaults:
  • SSH settings:
    • Allowed workspaces
    • Enable key management
    • Limit SSH connections to authenticated sessions via key fingerprint
    • Custom SSH server domain
    • Custom connection string display port
  • Custom Studio images:
    • Disallowed image repositories
    • Image naming strategy
    • Wave build status checks
  • Default privacy settings (private vs. collaborative by default)
  • Studios displayed per page
  • Feature manifest URL for version compatibility checks
  • Per workspace startup metrics & retention policy

Compute environments​

• Added ability to disable a compute environment.
• Improved compute environment form warning display with individual stacked alerts.
• Added m8gn, m8gb, c8id, m8id, r8id, x8aedz, g7e, p6-b300 instance families to NVMe list.
• Added new environment variable. See Configuration overview for the full descriptions and defaults:
  • TOWER_COMPUTE_ENV_CLEANUP_*

Azure​

• Added separate head and worker pool support for Azure Batch compute environments in both Forge and manual modes.
• Changed default Azure Batch job timeout to 7 days and exposed it as a new configuration item.
• Updated default Azure termination policy in compute environment creation form.
• Added VNet and subnet support for Azure Batch compute environments.
• Added support for separate managed identity client IDs and resource IDs for head and compute jobs in Azure Batch.
• Enabled Entra service principal credentials for Azure Batch Forge pool creation and Fusion v2.

AWS​

• Added AWS credential modes with support for key-based and role-based access.
• Added AWS External ID support for role-based credentials.

GCP​

• Added Workload Identity Federation (WIF) credential support for Google Batch and Google Cloud compute environments.
• Added support for network tagging in Google Batch.
• Added boot disk image selection for Google Batch compute environments.
• Added support for multiple machine types in Google Batch compute environments.
• Added configurable retry behavior for tasks with null exit codes in Google Batch compute environments.

Pipelines​

• Redesigned workflow notification email templates with updated styling.
• Added GitHub App manifest flow for credential creation.
• Improved clipboard UX in workflow details header.
• Redesigned report preview modal header layout and modal.
• Registered Nextflow CLI as a static OIDC client for authorization code with PKCE flow.
• Enriched the POST /trace/create response with platform metadata to reduce downstream API calls from Nextflow.

Datasets​

• Added preview for linked (URL-referenced) datasets.

Data Explorer​

• Added IGV for genomic data visualization.
• Added Molstar 3D viewer for molecular data visualization.
• Added extensible view mode selection for JSON files in Data Explorer (JSON, IGV, and plain text).
• Added auto-detection for IGV-renderable files (.bam, .bed, etc.).
• Updated Data Explorer to display non-native browser files as text when opened in a new tab.
• Added Fusion symlink resolution to the Data Explorer API.
• Increased the maximum data link name length to 512 characters.

Access control​

• Added required description field to custom role creation.
• Exposed roles API endpoints in the OpenAPI specification.
• Added SSO domain-based redirect for the login guard.

Monitoring and observability​

Admin panel

• Added real-time active user count display.
• Added workspace usage metrics.

Audit logs v2: new capabilities

• Added CSV export from the admin audit logs v2 table, with a configurable maximum record limit.
• Switched to token-based pagination for improved performance.
• Added comprehensive logging for SSO lifecycle events.
• Added descriptions and documentation metadata to audit event types, and renamed outdated event types for consistency.

Audit logs v2: richer event context

• Added owner ID and workspace ID metadata to Studios session audit events and to all data link audit events.
• Added target organization, workspace, and user context to audit log v2 interfaces.
• Added a target_name field to the data model and surfaced target resource names across event emission points, the admin table, the API, the UI, and CSV exports.

Audit logs v2: migration and cleanup

• Migrated telemetry usage queries to the v2 table.
• Updated the audit log cleaner to handle both v1 and v2 tables.
• Removed unused instanceId and instanceName columns from the v2 table.

Environment variables

• See the Configuration overview for the full descriptions and defaults:
  • TOWER_AUDIT_LOG_V2_WRITE_MODE
  • TOWER_AUDIT_LOG_V2_CSV_EXPORT_MAX_LOGS
  • TOWER_AUDIT_LOG_V2_PRE_POST_CHANGE_ENABLED
  • TOWER_CRON_AUDIT_LOG_CLEAN_UP_*

General​

• Bumped Micronaut from 4.7.6 to 4.8.3.
• Improved admin workspace list toolbar responsiveness.
• Applied updated status icons across platform components.
• Redesigned page header layout with improved toolbar and breadcrumb integration.
• Added automatic breadcrumb navigation to page headers.
• Updated delete workspace confirmation modal text to clarify the impact of deletion.
• Removed the dynamic resource labels feature toggle (feature is now always active).

Bug fixes​

Studios​

• Added workspace existence check before creating Studios workspace settings.
• Added validation of Git repository configuration files when creating a Studio.
• Fixed broken navigation from Studio details page for private Studios.
• Updated R-IDE to respect compute environment and Studio-specific environment variables.
• Fixed CSP header empty directive.

Compute environments​

• Fixed Google Batch machine type migration to be portable across MySQL and MariaDB.
• Removed hardcoded prediction model configuration from AWS Cloud platform provider.
• Fixed metering event handling to batch events when more than 100 events are received, preventing silent data loss.
• Removed default terminateAsync implementation to enforce explicit provider implementations.
• Propagated AWS Forge disposal failures instead of silently swallowing exceptions.
• Pinned google-cloud-storage to a compatible version to fix NoClassDefFoundError on GCS data link access.
• Returned an actionable error message when an Azure Batch pool is missing during job submission.
• Propagated GCP Forge disposal failures instead of silently ignoring resource deletion errors.
• Enabled cloud cache for Kubernetes compute environments with local PVC paths.

Pipelines​

• Fixed pipeline implicit default version resolution.
• Removed logs from AI debug button URL to prevent URI too large errors.
• Replaced document.write with client-side form submission in GitHub App manifest flow to fix Firefox blank page issue.
• Made workflow job cancellation idempotent to prevent 500 errors on concurrent cancel requests.
• Fixed parallel requests to pipeline info in the launch form.

Datasets​

• Fixed LazyInitializationException in avatar resolution during dataset creation.
• Fixed dataset name field to apply input normalization (spaces converted to underscores).
• Fixed column order preservation in dataset preview for TSV files.

Data Explorer​

• Fixed IGV MIME type detection in Data Explorer.

Monitoring and observability​

• Fixed dashboard drop-down scrolling and character overflow.
• Fixed task logging to use populated taskId instead of empty id.
• Fixed user_sign_in audit events to correctly populate the actor field with the signing user's ID.

General​

• Fixed side navigation width not updating in Safari when toggling the collapsed state.
• Fixed credits banner appearing during page load.
• Fixed oversized icon on the forbidden access page.

Upgrade notes​

Breaking changes​

Audit log versions in 26.1​

Seqera Platform Enterprise 26.1 introduces the audit log v2 schema as a breaking change for direct database consumers and custom ETL jobs. See the Upgrade guide for guidance.

Azure Batch Ubuntu 24.04 and AppArmor​

The ubuntu-hpc image in Azure Batch now defaults to Ubuntu 24.04, whose kernel and AppArmor policy block the unprivileged user namespaces and FUSE mounts Fusion needs. Running Fusion on Ubuntu 24.04+ pools therefore requires an AppArmor profile that permits Fusion mounts to be loaded on every node, plus a matching --security-opt on each task container. This requires installing the AppArmor profile on the pool nodes. See Azure Batch AppArmor.

Forge compute environments

Seqera Platform handles everything automatically. No action required.

Manual compute environments

When Fusion is enabled and the pool's image SKU is 2404 or higher, Seqera Platform automatically appends the options below to the generated Nextflow configuration:

process.containerOptions = '--security-opt apparmor=seqera-fusionfs-container'

General​

• Demoted 'Request processing' log to trace in RegistryProxyService by @pditommaso in #1047

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.5...v1.33.6

General​

• Ported Wave CI to push to internal ECR (SEC-1395) by @ShahzebMahmood in #1039
• Embedded OpenAPI spec and Swagger UI in main Wave container by @pditommaso in #1043
• Used addIfLess for JWT refresh timer scheduling by @pditommaso in #1045

Dependencies​

• Updated node dependency to v24 by @seqeralabs-renovate in #1023

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.4...v1.33.5

This has an interactive form where you can browse all MultiQC config attributes (there are quite a lot). See them organised with help text and examples. Enter values into the form and have them validated in real time. 📋 ✅

Then see your generated YAML config in a code editor (where you can paste existing configs if you wish). See the config file explained, validated and suggestions for fixes. 📚

The config wizard is a static HTML file that is bundled with the MultiQC repo, but it's easiest to try out online: https://seqera.io/multiqc_config_wizard ✨

New modules​

• CheckAtlas (#3545)
  • A one-liner tool for quality control of single-cell atlases.
• Deacon (#3564)
  • Search and depletion of FASTA/FASTQ files and streams using accelerated minimizer matching.
• FastQE (#3490)
  • Uses emoji to represent FASTQ sequence quality scores.
• hicstuff (#3541)
  • Hi-C pipeline that generates contact maps from sequencing reads.
• HiFi-Trimmer (#3513)
  • Filters and trims adapter sequences from HiFi reads using BLAST.
• Riker (#3540)
  • Fast Rust toolkit that ports key sequencing QC tools from Picard.
• sincei (#1946)
  • Toolkit for processing and analysing single-cell (epi)genomics data.
• Trim Galore (#3538)
  • Native v2.x support: quality and adapter trimming for next-generation sequencing data, with special handling for RRBS libraries.

Module updates​

• Bases2Fastq: Major upgrade to the module, now shows a lot more information (#3460)
• Falco: Add native recognition for Falco output (#3497)
• Fastp: Add % surviving bases (#3472)
• Sequali: Expand general statistics, add normalised plots (#3530)

Module fixes​

• Bcftools: Fix stats zero-depth plot crash (#3556)
• Cell Ranger ARC: Fix key collisions between ATAC and GEX metrics (#3480)
• Dragen: Fix incorrect average GC% in FastQC for all samples except the first in batch (#3505)
• Haplocheck: Don't overwrite prior results, allow multiple samples (#3512)

Feature updates and improvements​

• Config: Major new automations using config schema (#3183, #3558, #3561)
  • Automated markdown reference documentation of all config attributes for the docs
  • New interactive tool for building, editing and validating MultiQC config files: https://seqera.io/multiqc_config_wizard
• AI: Catch unexpected AWS Bedrock response shapes (#3440)
• custom_plot_config: Fix deprecated camelCase aliases (e.g. yPlotBands) (#3547)
• custom_plot_config: Per-tab targeting for multi-data_labels plots (#3548)
• Custom content: Fix crash on data type conflict between files (#3560)
• Custom images: Support more MIME types, add custom favicon (#3469)
• Plots: Add section alerts for filtered samples (#3549)
• Plots: Fix barplot ValueError when all categories are zero (#3563)
• Report: Add spacing between AI summary and general stats (#3470)
• Run merging: Fix grouped sample totals and hierarchy being lost during parquet merging (#3559)
• Tables: Allow defaultsort to include the first column header (#3519)
• Tests: Fix pytest warning sources (#3551)

Fixes​

• Config: Fix env var overwrite where booleans/ints/floats were stored as strings (#3557)
• Core: Fix rich.panel import in module-failure exception handler (#3537)
• custom_plot_config: Fix parsing of y_bands/x_bands/x_lines/y_lines (#3459)
• Report: Fix race causing empty zip files when exporting plots (#3555)

Infrastructure and packaging​

• Claude Code: Update agent instructions (#3552)
• Frontend: Update npm packages (#3562)
• Packaging: Bump minimum Python to 3.9 (#3542)
• Polars: Replace deprecated polars-lts-cpu dependency (#3553)
• Polars: Use Pyodide-compatible dependency on Emscripten (#3554)

Optimization, refactoring and typing​

• Linting: Drop Python 2-era idioms (#3546)

New Contributors​

• @hemant-goyal made their first contribution in https://github.com/MultiQC/MultiQC/pull/3497
• @FelixKrueger made their first contribution in https://github.com/MultiQC/MultiQC/pull/3538
• @yunhailuo made their first contribution in https://github.com/MultiQC/MultiQC/pull/3480
• @vivekbhr made their first contribution in https://github.com/MultiQC/MultiQC/pull/1946
• @tfenne made their first contribution in https://github.com/MultiQC/MultiQC/pull/3540
• @muffato made their first contribution in https://github.com/MultiQC/MultiQC/pull/3513
• @js2264 made their first contribution in https://github.com/MultiQC/MultiQC/pull/3541
• @chelauk made their first contribution in https://github.com/MultiQC/MultiQC/pull/3492

Full Changelog: https://github.com/MultiQC/MultiQC/compare/v1.34...v1.35

General​

• Updated migration docs now that 26.04 is released by @ewels in #7085

Dependencies​

• Bumped ch.qos.logback:logback-classic to v1.5.32 by @seqeralabs-renovate in #7126
• Bumped nf-amazon@3.9.1 by @pditommaso in 816c0774
• Bumped nf-azure@1.22.3 by @pditommaso in 78fa5013
• Bumped nf-codecommit@0.5.2 by @pditommaso in 4ae5c872
• Bumped nf-seqera@0.19.1 by @pditommaso in 764003a9

Bug fixes​

General​

• Fixed module binaries on nextflow module run via session flag by @pditommaso in #7089

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.1

General​

• Truncated verbose DEBUG log payloads to reduce heap pressure by @pditommaso in #1041

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.3...v1.33.4

Feature updates and improvements​

Dependencies​

• Bumped nf-tower@1.17.6 by @pditommaso

Bug fixes​

Language features​

• Fixed formatting bug with map key expression by @bentsherman in #6893
• Fixed incorrect evaluation of secret process directive by @bentsherman in #6934
• Fixed params block in included module by @bentsherman in #6940
• Fixed params inclusion across modules in v2 parser by @bentsherman in #6766

Configuration​

• Fixed resolution of params in resolved config text by @jorgee in #7072

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.5

Compute environments​

• Added force-delete for stuck compute environments.
• Added an optional description field to compute environments.
• Added region name search to the Seqera Compute drop-down mwnu.

Pipelines​

• Added Nextflow lineage integration with indexing, API, and UI for browsing workflow lineage data.
• Added cron action source for scheduled pipeline launches.
• Added effectiveCpus and effectiveMemory helpers on Task.

Monitoring​

• Added GPU metrics.

General​

• Added automatic breadcrumb navigation in the page header.

Bug fixes​

Compute environments​

• Fixed AWS Batch child jobs to terminate on workflow cancellation.
• Added hpc6id to the NVMe instance families allowlist.

Data Explorer​

• Fixed 403 errors to surface properly when adding a data-link to a GCS bucket.
• Fixed text overflow in the Data Explorer modal.

Pipelines​

• Fixed cpuShares to vCPU conversion in Task.getEffectiveCpus.
• Fixed parameters being hidden in the launch form when hidden=false is set in nextflow_schema.json.

Access control​

• Fixed user metadata reading for name, surname, and organization fields.
• Fixed organization claim reading to use the namespaced claim instead of user_metadata.
• Classified DCR-registered OIDC clients as third-party.
• Updated the default refresh token expiration in OIDC.
• Fixed POST /metering to allow regular authenticated users.

Studios​

• Fixed the Studio form to enable buttons after valid input.
• Fixed the Mount data button to display on the Studios form.

General​

• Fixed copy icon position by pinning it to the top-right corner in code blocks.

Feature updates and improvements​

Configuration​

• Renamed nextflow.preview.types feature flag to nextflow.enable.types by @pditommaso in #7067
• Added support for validation of collection params with record types by @bentsherman in #7025

General​

• Added -user-secret and -workspace-secret flags to nextflow launch by @rnaidu-seqera in #7040

Bug fixes​

Language features​

• Fixed runtime type reflection in nf-lang by @bentsherman in #7077

General​

• Fixed ANSI colors in error messages by @ewels in #7078

Dependencies​

• Bumped nf-tower@1.27.0

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.0

Container building​

• Added BuildEnabled flag in MultiPlatformBuildService by @munishchouhan in #1030

General​

• Added missing configuration documentation by @munishchouhan in #1025
• Refined Docker Compose setup for Wave Lite by @munishchouhan in #1033
• Reduced Wave resource requirements in installation manifests by @bebosudo in #1028
• Updated documentation with minor clarity improvements by @christopher-hakkaart in #1034

Dependencies​

• Updated third-party dependency versions to latest stable by @cristianrcv in #1037

Bug fixes​

Container building​

• Added micromamba clean to v2 templates to reduce image size by @munishchouhan in #1038

Singularity​

• Fixed pixi Singularity template PATH environment by @munishchouhan in #1036

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.2...v1.33.3

Access control​

• Added PKCE and consent flow support to OIDC, enabling Seqera Platform to act as an identity provider for OIDC/OAuth2 clients such as the Seqera AI CLI.

Bug fixes​

Pipelines​

• Fixed Nextflow timeline config generation to resolve NXF_TML_FILE via System.getenv instead of relying on shell variable expansion.
• Fixed the Browse button in the pipeline launch form being hidden for users with Launch, Connect, or View workspace roles by gating it on the correct permission instead of the Studios studio:execute grant.

Upgrade notes​

No breaking changes. Standard upgrade procedure applies.

Language features​

• Removed unnecessary runtime checks with strict syntax by @bentsherman in #6539

Dependencies​

• Bumped nf-amazon@3.4.4
• Bumped nf-google@1.23.5
• Bumped nf-tower@1.17.5

Bug fixes​

Language features​

• Fixed false error with optional param by @bentsherman in #6811
• Fixed false error with multi-line tuple assignment in v2 parser by @bentsherman in #6786
• Fixed false error in v2 parser when including config file from HTTP URL by @bentsherman in #6753

AWS Batch​

• Added isCompleted check in getNumSpotInterruptions by @munishchouhan in #6806

General​

• Fixed LogsCheckpoint thread blocking shutdown for up to 90 seconds by @pditommaso in #6787

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.4-edge

• Methurator (#3447)
  • A Python package designed to estimate CpGs saturation for DNA methylation sequencing data.
• riboWaltz (#3465)
  • Computes P-site offsets and performs quality control for ribosome profiling (Ribo-seq) data.

Feature updates and improvements​

• Add uv as an installation method in docs and README (#3493)
• Add Claude PostToolUse hook for code formatting (#3461)
• Bump default AI models for Anthropic (#3430)
• Remove HTML tags in generated module docs (#3509)
• Enable code review workflow to post comments on PRs (#3506)
• better header k/v spacing (#3471)
• Hide AI summary sections when simple_output is enabled (#3500)
• export_plots_timeout: Add docs and increase default to 60s (#3433)

Module updates​

• Clarify RSeQC bam_stat proper pairs column title (#3526)
• Fix mosdepth coverage in general stats if key is missing (#3432)
• fastp: Add limits, update color scale of % PF/% Adapter (#3454)
• fastp: Pick up version number for fasterp runs (#3392)
• Freyja: Use safe alternative to eval() (#3531)

Fixes​

• Fix heatmap axis labels not updating when toggling clustering (#3487)
• Fix bug: Toggling highlighting for AI summary sample names didn't work (#3455)
• fix table scroll styling with sticky headers (#3437)

Module fixes​

• Fix sample name cleaning in CheckM and CheckM2 modules (#3464)
• CrosscheckFingerprints: Fix bug due to overwriting row_number variable (#3458)
• Porechop: Fix bug with "End Trimmed Percent" denominator (#3456)
• Fix incorrect plot title in umicollapse module (#3446)
• SNPsplit: Fix module datetime serialization error (#3444)

Infrastructure and packaging​

• Switch from pre-commit to prek (#3467)

New Contributors​

• @CelinePrakash made their first contribution in https://github.com/MultiQC/MultiQC/pull/3458
• @nictru made their first contribution in https://github.com/MultiQC/MultiQC/pull/3487
• @drbh made their first contribution in https://github.com/MultiQC/MultiQC/pull/3392

Full Changelog: https://github.com/MultiQC/MultiQC/compare/v1.33...v1.34

Language features​

• Added option to disable printing workflow outputs by @bentsherman in #7018
• Resolved structured process input types by @bentsherman in #7014

S3​

• Applied socket timeout to S3 CRT connections by @jorgee in #7024
• Managed AWS SDK exceptions to convert to the appropriate IO exceptions by @jorgee in #6707

Plugins​

• Updated missing pf4j updates by @jorgee in #7016

Fusion​

• Added Fusion GPU metrics collection by @pditommaso in #7022
• Used Fusion trace metrics to replace bash command-trace wrapper by @pditommaso in #7041

General​

• Added -files-from option to lint command to avoid ARG_MAX limit by @adamrtalbot in #6858
• Added 26.04 migration docs by @bentsherman in #7000
• Allowed cloning from local Git repositories when --offline by @MatthiasZepper in #7035
• Allowed running pipeline from URL and main script path by @jorgee in #6602
• Filtered autoLabels to selected workflow-metadata fields by @pditommaso in #7049
• Honored process.resourceLabels in nf-seqera executor by @pditommaso in #7048
• Renamed module info subcommand to module view by @pditommaso in #7052
• Simplified demo module README template by @pditommaso in #7051
• Suppressed lint progress logging with -q flag by @ewels in #6880

Bug fixes​

Language features​

• Fixed formatting issues with complex expressions by @bentsherman in #7027

S3​

• Fixed S3FileSystemProvider.newInputStream() draining full object on close by @jorgee in #7046

Plugins​

• Fixed inconsistent indentation in nf-amazon by @bentsherman in #7047
• Fixed nextflowVersion for nf-tower and nf-seqera plugins by @pditommaso in cbc0a2d8e

General​

• Fixed generated process name in module create command by @jorgee in #7008
• Fixed module info formatting separator by @pditommaso in #7033
• Fixed resolution of -with-tower with TOWER_API_ENDPOINT by @bentsherman in #7045
• Fixed saveCacheFiles early return skipping log file uploads by @munishchouhan in #7015

Dependencies​

• Bumped org.bouncycastle:bcpkix-jdk18on from 1.79 to 1.84 by @dependabot in #7042
• Bumped nf-amazon@3.8.3
• Bumped nf-k8s@1.5.2
• Bumped nf-seqera@0.18.0
• Bumped nf-tower@1.25.0
• Bumped nf-wave@1.19.1

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.3-edge

Compute environments​

• Replaced Azure Batch JobCleanupPolicy with DeleteTasks, DeleteJobs, and TerminateJob boolean options in the API.
• Added configurable head job CPUs and memory for Azure Batch.
• Renamed Instance type to Head instance type in AWS Cloud compute environments.

Pipelines​

• Added resourceAllocation to task data extension.
• Added bucket events to Actions.

Access control​

• Disabled collaborators for Cloud Pro SSO.
• Mapped Auth0 organization claim to user profile.
• Improved SSO collaborators and members error banners.

Bug fixes​

Pipelines​

• Fixed forbidden repository schema requests for shared pipelines.
• Fixed permission check for the browse button in the launch form.
• Added missing -X POST to the Action curl snippet.

General​

• Fixed resource labels value search in label suggestions.
• Added missing InputNormalizeDirective to the workspace form.

Container Building​

• Added max size validation for container layer location by @pditommaso in #1006

General​

• Updated wave.build.public-repo reference language by @christopher-hakkaart in #1008
• Replaced local DurationUtils with shared lib-util-time by @pditommaso in #1010

Dependencies​

• Updated actions/checkout action to v4.3.1 by @seqeralabs-renovate[bot] in #1013
• Updated actions/setup-java action to v4.8.0 by @seqeralabs-renovate[bot] in #1014
• Updated actions/setup-node action to v4.4.0 by @seqeralabs-renovate[bot] in #1015
• Updated actions/upload-artifact action to v4.6.2 by @seqeralabs-renovate[bot] in #1016
• Updated aws-actions/amazon-ecr-login action to v1.7.1 by @seqeralabs-renovate[bot] in #1017
• Updated aws-actions/configure-aws-credentials action to v1.7.0 by @seqeralabs-renovate[bot] in #1018
• Updated dependency node to v20.20.2 by @seqeralabs-renovate[bot] in #1019
• Updated docker/login-action action to v3.7.0 by @seqeralabs-renovate[bot] in #1020
• Updated docker/setup-buildx-action action to v3.12.0 by @seqeralabs-renovate[bot] in #1021
• Upgraded third-party dependencies to latest stable versions by @cristianrcv in #998
• Pinned dependencies by @seqeralabs-renovate[bot] in #1012

Bug fixes​

Container Building​

• Fixed Conda builds for packages requiring __cuda virtual package by @pditommaso in #1027

Singularity​

• Fixed build error with --build-template conda/micromamba:v2 for Singularity by @munishchouhan in #972

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.1...v1.33.2

Compute environments​

• Added support for separate head and worker pools in Azure Batch compute environments.
• Added the jobMaxWallClockTime option to Azure Batch compute environments.

Studios​

• Added the ability to edit a stopped Studio.

Access control​

• Decoupled the Auth0 Management API audience from the OIDC issuer to support custom Auth0 domains.

General​

• Introduced secondary tab navigation for organization and workspace pages.

Bug fixes​

Compute environments​

• Fixed Forge disposal failures being silently swallowed by propagating the underlying exceptions.
• Fixed job cancellation to be idempotent for already-canceled jobs.
• Fixed Azure Batch error handling to return an actionable message when the configured pool is missing.
• Fixed silently swallowed GCP Forge disposal failures by propagating the underlying exceptions.
• Fixed Azure Batch dual-pool mode to assign only the relevant managed identity to each pool.

Data explorer​

• Fixed IGV MIME type resolution in Data explorer.

Pipelines​

• Fixed the placement of the "compute environment not available" message in the pipeline form.

Studios​

• Fixed route URL mutation in the Studio resolver.

Language features​

• Added typed workflows by @bentsherman in #6881

Modules​

• Added module create subcommand by @pditommaso in #6992
• Added module spec command by @jorgee in #6859
• Added module validate subcommand by @pditommaso in #6993
• Replaced custom ModuleRegistryClient with npr-client API by @pditommaso in #7012

General​

• Added compute env ID and provider support to Seqera executor by @pditommaso in #6906
• Added resourceAllocation field to trace record by @pditommaso in #6973
• Replaced Auth0 with Platform OIDC PKCE for auth login by @pditommaso in #6953
• Used inline metadata from trace create response by @pditommaso in #6976

Bug fixes​

General​

• Fixed NPE in GitLab/Gitea getGitCredentials when password is null but token is set by @robsyme in #7007
• Fixed missing version for junit-platform-launcher dependency by @pditommaso in #7011

Dependencies​

• Bumped nf-amazon@3.8.2
• Bumped nf-seqera@0.17.0
• Bumped nf-tower@1.24.0

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.2-edge

Studios​

• Updated Studios micromamba to conda/micromamba:v2 and Wave to 1.33.0.

Compute environments​

• Added private VNet and subnet support for Azure Batch compute environments.
• Added separate Azure managed identities for head and compute jobs.
• Improved compute environment metering system with observability and retry logic.

Datasets​

• Added frontend implementation for dataset import from URL.
• Added preview support for linked datasets.

Data Explorer​

• Added Fusion symlink support in Data Explorer.
• Increased maximum data-link name length to 512 characters.

Bug fixes​

Compute environments​

• Fixed projectId on WIF LoggingOptions for log retrieval.
• Fixed WIF log retrieval to resolve project number to project name.
• Fixed WIF organization and workspace context propagation for log retrieval and data links.

Pipelines​

• Fixed parallel requests to pipeline info in launch form.

Datasets​

• Fixed dataset name field to apply input normalization.
• Fixed column order preservation in dataset preview for TSV files.

Access control​

• Fixed handling of absent Auth0 organization context.

Studios​

• Added Wave nameStrategy workspace setting for Studios.

Compute environments​

• Added Azure service principal credentials support.
• Added Workload Identity Federation support for Google Batch compute environments.
• Added Entra credentials for Azure Batch Forge and Fusion v2.
• Added resource labels as metadata on Azure Batch jobs.
• Added support for multiple machine types in Google Batch compute environments.

Pipelines​

• Added Nextflow CLI as a static OIDC client.

Datasets​

• Added URL redirection logic to dataset file endpoint.

Data Explorer​

• Added extensible view mode selection for JSON files.
• Added open in new tab support for all files.

Monitoring​

• Updated database model to include target resource name.

General​

• Applied new email design to all email templates.
• Updated copy in delete workspace confirmation modal.
• Removed unused Containers page.
• Upgraded to Angular 21.

Bug fixes​

Studios​

• Fixed git config file validation when creating a Studio.

Compute environments​

• Fixed errors not propagated when a job is terminated asynchronously.
• Removed deprecated seqera.executor.predictionModel configuration.
• Removed terminateAsync default implementation.

Access control​

• Fixed Auth0 OAuth2 flow to handle ResponseClosedException.

Monitoring​

• Fixed credential audit events to include metadata.
• Fixed task logging to use populated taskId instead of empty id.

General​

• Fixed page-header actions, documentation links, and spacing.
• Fixed forbidden page icon size.